UQ RCC HPC Documentation

High Performance Computing guides and policies for the University of Queensland.

View the Project on GitHub UQ-RCC/hpc-docs

UQRDM overview

UQ Research Data Manager (UQRDM) allows all UQ researchers to store and share active research data safely and securely with internal and external collaborators. UQRDM is also the university’s thesis submission and tracking service, and integrates with the university research repository eSpace.
https://rdm.uq.edu.au

UQRDM User Guides provide information and step by step “howtos” and contain the answer to most questions and concerns.
https://guides.library.uq.edu.au/for-researchers/uq-research-data-manager

PhD students should make sure that they have read the specific instructions on how to setup a UQRDM for a PhD student as it will avoid typical access problems and questions. PhD students should set up their UQRDM with their student account but should add their staff account as a collaborator. This will enable access no matter with which account they are logged into a service.
https://guides.library.uq.edu.au/for-researchers/uq-research-data-manager/hdr-support

The first point of contact for questions and problems is the UQRDM support team. They are able to triage the question or problem and then assign to the right team or person. Please make sure to select UQ Research Data Manager.
https://support.staff.uq.edu.au/app/opa/research_support

The term RDM is often applied in general terms for storage. In more detail, an RDM consits of a Research Record and added Services such as a Storage Record. The Storage Record is the space where the user can store their data.

There are 3 different types of Storage Record: general data (A storage record), indentifiable data (I storage record), HPC available data (Q storage record). The user must select one type when the Storage Record is added and this cannot be changed once the Storage Record has been created. Only Q Storage Records (Q RDM or Q collection) are accessible through HPC Bunya.

UQRDM Q storage records

A UQRDM Q storage record is safe, backed up, and recoverable storage for research data. Q storage records are automaticaly available on Bunya and onBunya.

[!IMPORTANT] UQRDM Q storage records should not be used as storage for active computations. UQRDM Q storage records should not be used for rapidly changing data or simultaneous modification of the same file by multiple users (e.g. one person changing one field in a spreadsheet whilst somebody else has it open and is editing a different one) or in multiple locations (i.e. you should not edit a file on cloud.rdm.uq.edu.au or via HPC Bunya and on your desktop at the same time). The total number of files available per Q storage record is limited (the default is one million) and lots of small files is slower to transfer than a few large files. UQRDM works best when files that are not being frequently used are stored in archive files (e.g. tar, zip, 7zip, rar) before being backed up to RDM.

The diagram above shows a simplified view of the different ways (paths) a Q storage record can be accessed.

The following points outline what this means for common user questions and problems.

FAQ

I can see files/folders in my Q storage record on Bunya but I cannot see them from my desktop/laptop

1) The files/folders have been written to RDM recently. The changes are not instantly visible via the Institute or ITS cache as they need to sync first. 2) The files/folders have been written to RDM at least a few hours ago. There might be a syncing problem. If this concerns the ITS cache please contact the RDM team about this problem. If this concenrs the Institute cache then please contact RCC.

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